PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_198230_yrna.t2
Common NameSOVF_198230
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family AP2
Protein Properties Length: 478aa    MW: 51998.7 Da    PI: 8.106
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_198230_yrna.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56e-17145194155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sp_198230_yrna.t2 145 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 194
                        78*******************......55************************997 PP

2AP239.31.6e-12238287154
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 
                        s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ + +
  Sp_198230_yrna.t2 238 SRYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIQCN 287
                        79********.7******5553..2.26**********99*********98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.57E-15145202IPR016177DNA-binding domain
PfamPF008475.5E-9145194IPR001471AP2/ERF domain
SMARTSM003801.2E-31146208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-16146202IPR001471AP2/ERF domain
CDDcd000184.38E-11146204No hitNo description
PROSITE profilePS5103217.82146202IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-16238297IPR016177DNA-binding domain
CDDcd000189.40E-24238298No hitNo description
PfamPF008472.5E-8238288IPR001471AP2/ERF domain
PROSITE profilePS5103215.369239296IPR001471AP2/ERF domain
SMARTSM003801.8E-30239302IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-15239297IPR001471AP2/ERF domain
PRINTSPR003675.1E-6240251IPR001471AP2/ERF domain
PRINTSPR003675.1E-6278298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MNDEGSATNT ELSGTSSASS LVNATAEESP ISGAGEFDFF SKHSSADVSP FVTRQLFPMN  60
EGDNGGGSVG YDGGGDGTRE MELLRLGSSS STPRSMPTNH NSNSNQWLNL SVLGSGPGSG  120
VGTEQQNNAK QQVRRSRRGP RSRSSQYRGV TFYRRTGRWE SHIWDCGKQV YLGGFDTAHA  180
AARAYDRAAI KFRGVDADIN FTIADYEDDM KQQMKNLSKE EFVHILRRQS TGFSRGSSRY  240
RGVTLHKCGR WEARMGQFLG KKYIYLGLFD SEVEAARAYD KAAIQCNGRE AVTNFESSSY  300
QGQIPIMQPN NQGDGQNLDL NLGISITIDK GAGESQPHHP PLHLPNGNWP ANGSYFIPGA  360
PQLYGQPLAS RQSTPMWSGL PPGRPATYEE RVSDQQKLEA IAGSARLPNW GWYMQNQGGQ  420
GGGSGGTANQ VQQLSNAASS GFSSFSTTTT SSANYPFTTL HNDFHNNNNN NNNHTQGR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693088.10.0PREDICTED: floral homeotic protein APETALA 2-like isoform X1
SwissprotP479273e-91AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBLA0A0K9QBF80.0A0A0K9QBF8_SPIOL; Uncharacterized protein
STRINGPOPTR_0008s04490.11e-128(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.32e-94related to AP2.7